MAP: Microarray data Analysis Pipeline
This pipeline can be used to upload raw microarray data, process the data (normalization, quality filtering, designate signal cutoffs), and analyze the data. Other types of data can also be used in the pipeline (amplicon sequencing date) for various statistical analysis.
MENA: Molecular Ecological Network Analysis Pipeline
This novel mathematical and bioinformatics framework was developed to construct ecological association networks, referred to as molecular ecological networks (MENs), through Random Matrix Theory (RMT)-based methods. This approach allows automatic definition of the network and is robust to noise, thus providing an excellent solution to several common issues associated with high-throughput metagenomics data analysis.