Automated Read-based Metagenomic Analysis Pipeline (ARMAP 1.6, Sep. 2018)
This is an automated pipeline for analysis of shotgun metagenomic sequencing data.
The results include taxonomic classification and functional classificatio (SEED, KEGG, COG and GO).
Below is the work flow:
- Quality evaluation
- Quality evaluation
- Duplication removal
- Quality filtering
- Read statistics
- Format convert
- Data splitting
- DIAMOND search
- MEGAN classification
- Table integration
For more information, see the slides. To analyze your data, go to Job Submission. Click here for user log.